| 4253 |
10.1016/j.cell.2018.12.003 |
A Peninsular Structure Coordinates Asynchronous
Differentiation With Morphogenesis To Generate Pancreatic Islets |
Sharon, Nadav; Chawla, Raghav; Mueller, Jonas;
Vanderhooft, Jordan; Whitehorn, Luke James; Rosenthal, Benjamin;
Gurtler, Mads; Estanboulieh, Ralph R.; Shvartsman, Dmitry; Gifford,
David K.; Trapnell, Cole; Melton, Doug |
Cell |
2019 |
| 4261 |
10.1016/j.cell.2019.01.006 |
Optimal-Transport Analysis Of Single-Cell Gene
Expression Identifies Developmental Trajectories In Reprogramming |
Schiebinger, Geoffrey; Shu, Jian; Tabaka, Marcin;
Cleary, Brian; Subramanian, Vidya; Solomon, Aryeh; Gould, Joshua; Liu,
Siyan; Lin, Stacie; Berube, Peter; Lee, Lia; Chen, Jenny; Brumbaugh,
Justin; Rigollet, Philippe; Hochedlinger, Konrad; Jaenisch, Rudolf;
Regev, Aviv; Lander, Eric S. |
Cell |
2019 |
| 9648 |
10.1016/j.stem.2018.04.014 |
Single-Cell Transcriptomics Meets Lineage Tracing |
Kester, Lennart; Van Oudenaarden, Alexander |
Cell Stem Cell |
2018 |
| 9690 |
10.1016/j.stemcr.2018.12.012 |
|
Velazco-Cruz, Leonardo; Song, Jiwon; Maxwell, Kristina
G.; Goedegebuure, Madeleine M.; Augsornworawat, Punn; Hogrebe, Nathaniel
J.; Millman, Jeffrey R. |
Stem Cell Reports |
2019 |
| 12571 |
10.1038/nbt.4103 |
Simultaneous Single-Cell Profiling Of Lineages And Cell
Types In The Vertebrate Brain |
Raj, Bushra, 0000-0002-5833-0251; Wagner, Daniel E;
Mckenna, Aaron, 0000-0001-8277-6512; Pandey, Shristi; Klein, Allon M,
0000-0001-8913-7879; Shendure, Jay, 0000-0002-1516-1865; Gagnon, James
A, 0000-0003-3978-6058; Schier, Alexander F, 0000-0001-7645-5325 |
Nature Biotechnology |
2018 |
| 12572 |
10.1038/nbt.4124 |
Simultaneous Lineage Tracing And Cell-Type
Identification Using Crispr<U+2013>Cas9-Induced Genetic Scars |
Spanjaard, Bastiaan; Hu, Bo; Mitic, Nina;
Olivares-Chauvet, Pedro; Janjuha, Sharan; Ninov, Nikolay; Junker, Jan
Philipp, 0000-0002-2826-8290 |
Nature Biotechnology |
2018 |
| 13011 |
10.1038/s41467-019-09404-6 |
|
Rosado-Olivieri, Edwin A., 0000-0003-4756-0956;
Anderson, Kendall; Kenty, Jennifer H., 0000-0003-0974-9643; Melton,
Douglas A., 0000-0002-1623-5504 |
Nature Communications |
2019 |
| 13476 |
10.1038/s41556-018-0271-4 |
|
Nair, Gopika G.; Liu, Jennifer S.; Russ, Holger A.;
Tran, Stella; Saxton, Michael S.; Chen, Richard; Juang, Charity; Li,
Mei-Lan; Nguyen, Vinh Q.; Giacometti, Simone; Puri, Sapna; Xing, Yuan;
Wang, Yong; Szot, Gregory L.; Oberholzer, Jose; Bhushan, Anil; Hebrok,
Matthias, 0000-0002-3833-8862 |
Nature Cell Biology |
2019 |
| 13971 |
10.1038/s41576-020-0223-2 |
Lineage Tracing Meets Single-Cell Omics: Opportunities
And Challenges |
Wagner, Daniel E.; Klein, Allon M.,
0000-0001-8913-7879 |
Nature Reviews Genetics |
2020 |
| 14024 |
10.1038/s41580-019-0186-3 |
Unravelling Cellular Relationships During Development
And Regeneration Using Genetic Lineage Tracing |
Baron, Chloe S.; Van Oudenaarden, Alexander,
0000-0002-9442-3551 |
Nature Reviews Molecular Cell Biology |
2019 |
| 14077 |
10.1038/s41586-018-0414-6 |
Rna Velocity Of Single Cells |
La Manno, Gioele; Soldatov, Ruslan; Zeisel, Amit;
Braun, Emelie; Hochgerner, Hannah; Petukhov, Viktor; Lidschreiber,
Katja; Kastriti, Maria E.; Lonnerberg, Peter; Furlan, Alessandro; Fan,
Jean; Borm, Lars E.; Liu, Zehua; Van Bruggen, David; Guo, Jimin; He,
Xiaoling; Barker, Roger; Sundstrom, Erik; Castelo-Branco, Goncalo;
Cramer, Patrick; Adameyko, Igor; Linnarsson, Sten; Kharchenko, Peter
V. |
Nature |
2018 |
| 14119 |
10.1038/s41586-018-0744-4 |
Single-Cell Mapping Of Lineage And Identity In Direct
Reprogramming |
Biddy, Brent A.; Kong, Wenjun; Kamimoto, Kenji; Guo,
Chuner; Waye, Sarah E.; Sun, Tao; Morris, Samantha A. |
Nature |
2018 |
| 14122 |
10.1038/s41586-018-0762-2 |
Mechanosignalling Via Integrins Directs Fate Decisions
Of Pancreatic Progenitors |
Mamidi, Anant; Prawiro, Christy; Seymour, Philip A.; De
Lichtenberg, Kristian Honnens; Jackson, Abigail; Serup, Palle; Semb,
Henrik |
Nature |
2018 |
| 14147 |
10.1038/s41586-019-0933-9 |
A Single-Cell Molecular Map Of Mouse Gastrulation And
Early Organogenesis |
Pijuan-Sala, Blanca; Griffiths, Jonathan A.; Guibentif,
Carolina; Hiscock, Tom W.; Jawaid, Wajid; Calero-Nieto, Fernando J.;
Mulas, Carla; Ibarra-Soria, Ximena; Tyser, Richard C. V.; Ho, Debbie Lee
Lian; Reik, Wolf; Srinivas, Shankar; Simons, Benjamin D.; Nichols,
Jennifer; Marioni, John C.; Gottgens, Berthold |
Nature |
2019 |
| 14157 |
10.1038/s41586-019-0969-x |
The Single-Cell Transcriptional Landscape Of Mammalian
Organogenesis |
Cao, Junyue; Spielmann, Malte; Qiu, Xiaojie; Huang,
Xingfan; Ibrahim, Daniel M.; Hill, Andrew J.; Zhang, Fan; Mundlos,
Stefan; Christiansen, Lena; Steemers, Frank J.; Trapnell, Cole;
Shendure, Jay |
Nature |
2019 |
| 14187 |
10.1038/s41586-019-1127-1 |
The Emergent Landscape Of The Mouse Gut Endoderm At
Single-Cell Resolution |
|
Nature |
2019 |
| 14199 |
10.1038/s41586-019-1168-5 |
|
Veres, Adrian; Faust, Aubrey L.; Bushnell, Henry L.;
Engquist, Elise N.; Kenty, Jennifer Hyoje-Ryu; Harb, George; Poh,
Yeh-Chuin; Sintov, Elad; Gurtler, Mads; Pagliuca, Felicia W.; Peterson,
Quinn P.; Melton, Douglas A. |
Nature |
2019 |
| 14202 |
10.1038/s41586-019-1184-5 |
Molecular Recording Of Mammalian Embryogenesis |
Chan, Michelle M.; Smith, Zachary D.; Grosswendt,
Stefanie; Kretzmer, Helene; Norman, Thomas M.; Adamson, Britt; Jost,
Marco; Quinn, Jeffrey J.; Yang, Dian; Jones, Matthew G.; Khodaverdian,
Alex; Yosef, Nir; Meissner, Alexander; Weissman, Jonathan S. |
Nature |
2019 |
| 14242 |
10.1038/s41586-019-1469-8 |
Molecular Architecture Of Lineage Allocation And Tissue
Organization In Early Mouse Embryo |
Peng, Guangdun; Suo, Shengbao; Cui, Guizhong; Yu, Fang;
Wang, Ran; Chen, Jun; Chen, Shirui; Liu, Zhiwen; Chen, Guoyu; Qian, Yun;
Tam, Patrick P. L.; Han, Jing-Dong J.; Jing, Naihe |
Nature |
2019 |
| 14497 |
10.1038/s41587-019-0071-9 |
A Comparison Of Single-Cell Trajectory Inference
Methods |
Saelens, Wouter, 0000-0002-7114-6248; Cannoodt,
Robrecht, 0000-0003-3641-729X; Todorov, Helena, 0000-0002-1594-8609;
Saeys, Yvan, 0000-0002-0415-1506 |
Nature Biotechnology |
2019 |
| 14500 |
10.1038/s41587-019-0088-0 |
Inferring Population Dynamics From Single-Cell
Rna-Sequencing Time Series Data |
Fischer, David S., 0000-0002-1293-7656; Fiedler, Anna
K.; Kernfeld, Eric M., 0000-0002-2310-8191; Genga, Ryan M. J.;
Bastidas-Ponce, Aimee, 0000-0002-3117-3591; Bakhti, Mostafa,
0000-0002-2307-1122; Lickert, Heiko; Hasenauer, Jan,
0000-0002-4935-3312; Maehr, Rene, 0000-0002-9520-3382; Theis, Fabian J.,
0000-0002-2419-1943 |
Nature Biotechnology |
2019 |
| 14534 |
10.1038/s41587-020-0430-6 |
Targeting The Cytoskeleton To Direct Pancreatic
Differentiation Of Human Pluripotent Stem Cells |
Hogrebe, Nathaniel J., 0000-0002-6282-2056;
Augsornworawat, Punn, 0000-0001-8602-5433; Maxwell, Kristina G.,
0000-0003-0869-1662; Velazco-Cruz, Leonardo; Millman, Jeffrey R.,
0000-0003-0426-3492 |
Nature Biotechnology |
2020 |
| 14548 |
10.1038/s41587-020-0591-3 |
Generalizing Rna Velocity To Transient Cell States
Through Dynamical Modeling |
Bergen, Volker; Lange, Marius, 0000-0002-4846-1266;
Peidli, Stefan, 0000-0002-4257-8690; Wolf, F. Alexander,
0000-0002-8760-7838; Theis, Fabian J., 0000-0002-2419-1943 |
Nature Biotechnology |
2020 |
| 18737 |
10.1126/science.aar3131 |
Single-Cell Reconstruction Of Developmental
Trajectories During Zebrafish Embryogenesis |
Farrell, Jeffrey A., 0000-0003-4774-1562; Wang, Yiqun,
0000-0001-6861-8761; Riesenfeld, Samantha J.; Shekhar, Karthik; Regev,
Aviv, 0000-0003-3293-3158; Schier, Alexander F.,
0000-0001-7645-5325 |
Science |
2018 |
| 18741 |
10.1126/science.aar4362 |
Single-Cell Mapping Of Gene Expression Landscapes And
Lineage In The Zebrafish Embryo |
Wagner, Daniel E., 0000-0002-2983-635X; Weinreb, Caleb;
Collins, Zach M., 0000-0002-8943-7967; Briggs, James A.; Megason, Sean
G., 0000-0002-9330-2934; Klein, Allon M., 0000-0001-8913-7879 |
Science |
2018 |
| 18743 |
10.1126/science.aar5780 |
The Dynamics Of Gene Expression In Vertebrate
Embryogenesis At Single-Cell Resolution |
Briggs, James A.; Weinreb, Caleb; Wagner, Daniel E.,
0000-0002-2983-635X; Megason, Sean, 0000-0002-9330-2934; Peshkin,
Leonid, 0000-0002-6420-848X; Kirschner, Marc W., 0000-0001-6540-6130;
Klein, Allon M., 0000-0001-8913-7879 |
Science |
2018 |
| 18800 |
10.1126/science.aat9804 |
Developmental Barcoding Of Whole Mouse Via Homing
Crispr |
Kalhor, Reza, 0000-0002-5558-7545; Kalhor, Kian,
0000-0001-9416-3078; Mejia, Leo, 0000-0003-4383-8439; Leeper, Kathleen,
0000-0003-1728-9683; Graveline, Amanda, 0000-0002-2626-4093; Mali,
Prashant; Church, George M., 0000-0002-0775-2913 |
Science |
2018 |
| 18885 |
10.1126/science.aaw3381 |
Lineage Tracing On Transcriptional Landscapes Links
State To Fate During Differentiation |
Weinreb, Caleb, 0000-0001-6100-6084;
Rodriguez-Fraticelli, Alejo, 0000-0002-4017-8714; Camargo, Fernando D.;
Klein, Allon M., 0000-0001-8913-7879 |
Science |
2020 |
| 20007 |
10.1186/s12864-018-4772-0 |
Slingshot: Cell Lineage And Pseudotime Inference For
Single-Cell Transcriptomics |
Street, Kelly; Risso, Davide; Fletcher, Russell B.;
Das, Diya; Ngai, John; Yosef, Nir; Purdom, Elizabeth; Dudoit, Sandrine,
0000-0002-6069-8629 |
Bmc Genomics |
2018 |
| 20409 |
10.1242/dev.169730 |
Recording Development With Single Cell Dynamic Lineage
Tracing |
Mckenna, Aaron, 0000-0001-8277-6512; Gagnon, James A.,
0000-0003-3978-6058 |
Development |
2019 |
| 20410 |
10.1242/dev.170506 |
Concepts And Limitations For Learning Developmental
Trajectories From Single Cell Genomics |
Tritschler, Sophie; Buttner, Maren; Fischer, David S.;
Lange, Marius; Bergen, Volker; Lickert, Heiko, 0000-0002-4597-8825;
Theis, Fabian J., 0000-0002-2419-1943 |
Development |
2019 |
| 20412 |
10.1242/dev.173849 |
Massive Single-Cell Mrna Profiling Reveals A Detailed
Roadmap For Pancreatic Endocrinogenesis |
Bastidas-Ponce, Aimee; Tritschler, Sophie; Dony,
Leander; Scheibner, Katharina; Tarquis-Medina, Marta; Salinno, Ciro;
Schirge, Silvia; Burtscher, Ingo; Bottcher, Anika; Theis, Fabian;
Lickert, Heiko; Bakhti, Mostafa, 0000-0002-2307-1122 |
Development |
2019 |
| 20629 |
10.15252/msb.20188746 |
|
Luecken, Malte D, 0000-0001-7464-7921; Theis, Fabian J,
0000-0002-2419-1943 |
Molecular Systems Biology |
2019 |
| 21787 |
10.7554/elife.38519 |
Insulin Mutations Impair Beta-Cell Development In A
Patient-Derived Ipsc Model Of Neonatal Diabetes |
Balboa, Diego, 0000-0002-4784-5452; Saarimaki-Vire,
Jonna; Borshagovski, Daniel; Survila, Mantas; Lindholm, Paivi,
0000-0003-3022-5035; Galli, Emilia, 0000-0002-7419-611X; Eurola, Solja;
Ustinov, Jarkko; Grym, Heli; Huopio, Hanna; Partanen, Juha; Wartiovaara,
Kirmo; Otonkoski, Timo, 0000-0001-9190-2496 |
Elife |
2018 |